Publications
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2024
- K-nearest-neighbors induced topological PCA for single cell RNA-sequence data analysisComputers in biology and medicine 2024
- Analyzing single cell RNA sequencing with topological nonnegative matrix factorizationJournal of Computational and Applied Mathematics 2024
- Multiscale differential geometry learning of networks with applications to single-cell RNA sequencing dataComputers in Biology and Medicine 2024
- Analyzing scRNA-seq data by CCP-assisted UMAP and t-SNEPLOS One 2024
2023
- Analyzing scRNA-seq data by CCP-assisted UMAP and t-SNEarXiv preprint arXiv:2306.13750 2023
- Preprocessing of single cell RNA sequencing data using correlated clustering and projectionJournal of chemical information and modeling 2023
2022
- Emerging vaccine-breakthrough SARS-CoV-2 variantsACS infectious diseases 2022
- Ccp: Correlated clustering and projection for dimensionality reductionarXiv preprint arXiv:2206.04189 2022
- Emerging dominant SARS-CoV-2 variantsJournal of chemical information and modeling 2022
2021
- UMAP-assisted K-means clustering of large-scale SARS-CoV-2 mutation datasetsComputers in biology and medicine 2021
- Analysis of SARS-CoV-2 mutations in the United States suggests presence of four substrains and novel variantsCommunications biology 2021
2020
- Host immune response driving SARS-CoV-2 evolutionViruses 2020
- Decoding SARS-CoV-2 transmission and evolution and ramifications for COVID-19 diagnosis, vaccine, and medicineJournal of chemical information and modeling 2020
- Mutations on COVID-19 diagnostic targetsGenomics 2020
- Characterizing SARS-CoV-2 mutations in the United StatesResearch square 2020
- Decoding asymptomatic COVID-19 infection and transmissionThe journal of physical chemistry letters 2020
preparation
- Revealing the Shape of Genome Space via K-mer Topologypreparation